SeqToKnow: NGS Workflows Platform
Scalable, reproducible and customizable NGS data analysis workflows on cloud for clinical diagnostics and translational research with automated report generation and interactive visualizations
Analysis Capabilities
Genomics
Transcriptomics
Transcriptomics
- Whole genome (WGS) and exome (WES/WXS) sequence analysis
- Germline and somatic variant calling
- Variant annotation and prioritization
Transcriptomics
Transcriptomics
Transcriptomics
- Bulk RNA-Seq data analysis
- Differential gene expression analysis
- Variant calling
- Biomarker discovery
Immunology
Transcriptomics
Single-cell sequencing data analysis
- B and T cell epitope predictions.
- Peptide-MHC class-I and -II binding predictions.
- Antibody (BCR) and T cell receptor (TCR) sequence analysis
- HLA-typing using sequencing data
Single-cell sequencing data analysis
Single-cell sequencing data analysis
Single-cell sequencing data analysis
- Gene expression
- Immune profiling
- Antibody (BCR) and T cell receptor (TCR) sequence analysis
- scATAC-Seq data analysis
BioIT
Single-cell sequencing data analysis
Metagenomics
- Cloud computing
- Database development and management
- Recommendations and management of IT infrastructure systems
Metagenomics
Single-cell sequencing data analysis
Metagenomics
- Functional metagenomics data analysis
- Taxonomic profiling
- Microbial transcriptomics
- Microbial genome assembly
Proteomics
Metabolomics
Metabolomics
- Analyze and assemble mass spectrometry data.
- Identification of MHC binding peptides using mass spectrometry
- Drug and drug target discovery and biomarker research
- Protein structure analysis
Metabolomics
Metabolomics
Metabolomics
- Biomarker discovery
- Drug safety screens
- Flux analysis
Epigenetics
Metabolomics
Epigenetics
- Whole Genome Bisulfite Sequencing
- Targeted Bisulfite Sequencing
- ATAC-Seq and ChIP-Seq data analysis